PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG209800.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 356aa    MW: 38683.8 Da    PI: 6.5754
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG209800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.55.8e-09165207754
                          HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          + E++RR+r+ +++  L  l+P++     +K + a++   A+eYI++L
  Pavir.5NG209800.2.p 165 KKEKQRRQRLTEKYTALMLLIPNR-----TKDDRATVISDAIEYIQEL 207
                          57*********************9.....9****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.671158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-5164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-6165207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.24E-7167207No hitNo description
SuperFamilySSF474593.4E-10167230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-8167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MYHPQCELLM AHEGRDLDAG QPHLTASAGV AAIPTELSFH LLHSLDAAAA VSTVTPQPTI  60
DYFFGAAADP HQPPAVQYEP LPPTHQHTMN MLRDYCNGHY TAAEPYLRGA RTGALVFGAT  120
DDESAAYMPG PFESSPPPRA TGGRKRSRAM LSGGFHGGPA NGVEKKEKQR RQRLTEKYTA  180
LMLLIPNRTK DDRATVISDA IEYIQELGRT VEELTLLVGK KRRRMELQGD VVDAAPAAVV  240
PAGEAESSEG EVAPPPAAQL QPIRSTYIQR RSKDTSVDVR IVEEDVNIKL TKRRRDGCLA  300
AASRALDDLQ LDLVHLSGGK IGDCHIYMFN TKIHPSSPVF ASAVASRLME VVDEY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142148GRKRSRA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0643920.0BT064392.1 Zea mays full-length cDNA clone ZM_BFc0164O20 mRNA, complete cds.
GenBankBT0645730.0BT064573.1 Zea mays full-length cDNA clone ZM_BFc0184C05 mRNA, complete cds.
GenBankBT0689060.0BT068906.1 Zea mays full-length cDNA clone ZM_BFc0190J24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967599.10.0PREDICTED: transcription factor TIP2-like
SwissprotQ5JNS01e-163TIP2_ORYSJ; Transcription factor TIP2
TrEMBLK3XQC30.0K3XQC3_SETIT; Uncharacterized protein
STRINGSi004106m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.13e-33bHLH family protein